nilmdb/tests/test_numpyclient.py
Jim Paris e95142eabf Huge update to support inserting in client.numpyclient, with tests
This includes both client.stream_insert_numpy and
client.stream_insert_numpy_context().  The test code is based on
similar test code for client.stream_insert_context, so it should be
fairly complete.
2013-04-08 18:51:45 -04:00

334 lines
13 KiB
Python

# -*- coding: utf-8 -*-
import nilmdb.server
import nilmdb.client
import nilmdb.client.numpyclient
from nilmdb.utils.printf import *
from nilmdb.utils import timestamper
from nilmdb.client import ClientError, ServerError
from nilmdb.utils import datetime_tz
from nose.plugins.skip import SkipTest
from nose.tools import *
from nose.tools import assert_raises
import itertools
import distutils.version
from testutil.helpers import *
import numpy as np
testdb = "tests/numpyclient-testdb"
testurl = "http://localhost:32180/"
def setup_module():
global test_server, test_db
# Clear out DB
recursive_unlink(testdb)
# Start web app on a custom port
test_db = nilmdb.utils.serializer_proxy(nilmdb.server.NilmDB)(testdb)
test_server = nilmdb.server.Server(test_db, host = "127.0.0.1",
port = 32180, stoppable = False,
fast_shutdown = True,
force_traceback = True)
test_server.start(blocking = False)
def teardown_module():
global test_server, test_db
# Close web app
test_server.stop()
test_db.close()
class TestNumpyClient(object):
def test_numpyclient_01_basic(self):
# Test basic connection
client = nilmdb.client.numpyclient.NumpyClient(url = testurl)
version = client.version()
eq_(distutils.version.LooseVersion(version),
distutils.version.LooseVersion(test_server.version))
# Verify subclassing
assert(isinstance(client, nilmdb.client.Client))
# Layouts
for layout in "int8_t", "something_8", "integer_1":
with assert_raises(ValueError):
for x in client.stream_extract_numpy("/foo", layout=layout):
pass
for layout in "int8_1", "uint8_30", "int16_20", "float64_100":
with assert_raises(ClientError) as e:
for x in client.stream_extract_numpy("/foo", layout=layout):
pass
in_("No such stream", str(e.exception))
with assert_raises(ClientError) as e:
for x in client.stream_extract_numpy("/foo"):
pass
in_("can't get layout for path", str(e.exception))
client.close()
def test_numpyclient_02_extract(self):
client = nilmdb.client.numpyclient.NumpyClient(url = testurl)
# Insert some data as text
client.stream_create("/newton/prep", "float32_8")
testfile = "tests/data/prep-20120323T1000"
start = nilmdb.utils.time.parse_time("20120323T1000")
rate = 120
data = timestamper.TimestamperRate(testfile, start, rate)
result = client.stream_insert("/newton/prep", data,
start, start + 119999777)
# Extract Numpy arrays
array = None
pieces = 0
for chunk in client.stream_extract_numpy("/newton/prep", maxrows=1000):
pieces += 1
if array is not None:
array = np.vstack((array, chunk))
else:
array = chunk
eq_(array.shape, (14400, 9))
eq_(pieces, 15)
# Try structured
s = list(client.stream_extract_numpy("/newton/prep", structured = True))
assert(np.array_equal(np.c_[s[0]['timestamp'], s[0]['data']], array))
# Compare. Will be close but not exact because the conversion
# to and from ASCII was lossy.
data = timestamper.TimestamperRate(testfile, start, rate)
actual = np.fromstring(" ".join(data), sep=' ').reshape(14400, 9)
assert(np.allclose(array, actual))
client.close()
def test_numpyclient_03_insert(self):
client = nilmdb.client.numpyclient.NumpyClient(url = testurl)
# Limit _max_data just to get better coverage
old_max_data = nilmdb.client.numpyclient.StreamInserterNumpy._max_data
nilmdb.client.numpyclient.StreamInserterNumpy._max_data = 100000
client.stream_create("/test/1", "uint16_1")
client.stream_insert_numpy("/test/1",
np.array([[0, 1],
[1, 2],
[2, 3],
[3, 4]]))
# Wrong number of dimensions
with assert_raises(ValueError) as e:
client.stream_insert_numpy("/test/1",
np.array([[[0, 1],
[1, 2]],
[[3, 4],
[4, 5]]]))
in_("wrong number of dimensions", str(e.exception))
# Unstructured
client.stream_create("/test/2", "float32_8")
client.stream_insert_numpy(
"/test/2",
client.stream_extract_numpy(
"/newton/prep", structured = False, maxrows = 1000))
# Structured, and specifying layout
client.stream_create("/test/3", "float32_8")
client.stream_insert_numpy(
path = "/test/3", layout = "float32_8",
data = client.stream_extract_numpy(
"/newton/prep", structured = True, maxrows = 1000))
# Structured, specifying wrong layout
client.stream_create("/test/4", "float32_8")
with assert_raises(ValueError) as e:
client.stream_insert_numpy(
"/test/4", layout = "uint16_1",
data = client.stream_extract_numpy(
"/newton/prep", structured = True, maxrows = 1000))
in_("wrong dtype", str(e.exception))
# Unstructured, and specifying wrong layout
client.stream_create("/test/5", "float32_8")
with assert_raises(ClientError) as e:
client.stream_insert_numpy(
"/test/5", layout = "uint16_8",
data = client.stream_extract_numpy(
"/newton/prep", structured = False, maxrows = 1000))
# timestamps will be screwy here, because data will be parsed wrong
in_("error parsing input data", str(e.exception))
# Make sure the /newton/prep copies are identical
a = np.vstack(client.stream_extract_numpy("/newton/prep"))
b = np.vstack(client.stream_extract_numpy("/test/2"))
c = np.vstack(client.stream_extract_numpy("/test/3"))
assert(np.array_equal(a,b))
assert(np.array_equal(a,c))
nilmdb.client.numpyclient.StreamInserterNumpy._max_data = old_max_data
client.close()
def test_numpyclient_04_context(self):
# Like test_client_context, but with Numpy data
client = nilmdb.client.numpyclient.NumpyClient(testurl)
client.stream_create("/context/test", "uint16_1")
with client.stream_insert_numpy_context("/context/test") as ctx:
# override _max_rows to trigger frequent server updates
ctx._max_rows = 2
ctx.insert([[1000, 1]])
ctx.insert([[1010, 1], [1020, 1], [1030, 1]])
ctx.insert([[1040, 1], [1050, 1]])
ctx.finalize()
ctx.insert([[1070, 1]])
ctx.update_end(1080)
ctx.finalize()
ctx.update_start(1090)
ctx.insert([[1100, 1]])
ctx.insert([[1110, 1]])
ctx.send()
ctx.insert([[1120, 1], [1130, 1], [1140, 1]])
ctx.update_end(1160)
ctx.insert([[1150, 1]])
ctx.update_end(1170)
ctx.insert([[1160, 1]])
ctx.update_end(1180)
ctx.insert([[1170, 123456789.0]])
ctx.finalize()
ctx.insert(np.zeros((0,2)))
with assert_raises(ClientError):
with client.stream_insert_numpy_context("/context/test",
1000, 2000) as ctx:
ctx.insert([[1180, 1]])
with assert_raises(ClientError):
with client.stream_insert_numpy_context("/context/test",
2000, 3000) as ctx:
ctx._max_rows = 2
ctx.insert([[3180, 1]])
ctx.insert([[3181, 1]])
with client.stream_insert_numpy_context("/context/test",
2000, 3000) as ctx:
# make sure our override wasn't permanent
ne_(ctx._max_rows, 2)
ctx.insert([[2250, 1]])
ctx.finalize()
with assert_raises(ClientError):
with client.stream_insert_numpy_context("/context/test",
3000, 4000) as ctx:
ctx.insert([[3010, 1]])
ctx.insert([[3020, 2]])
ctx.insert([[3030, 3]])
ctx.insert([[3040, 4]])
ctx.insert([[3040, 4]]) # non-monotonic after a few lines
ctx.finalize()
eq_(list(client.stream_intervals("/context/test")),
[ [ 1000, 1051 ],
[ 1070, 1080 ],
[ 1090, 1180 ],
[ 2000, 3000 ] ])
client.stream_remove("/context/test")
client.stream_destroy("/context/test")
client.close()
def test_numpyclient_05_emptyintervals(self):
# Like test_client_emptyintervals, with insert_numpy_context
client = nilmdb.client.numpyclient.NumpyClient(testurl)
client.stream_create("/empty/test", "uint16_1")
def info():
result = []
for interval in list(client.stream_intervals("/empty/test")):
result.append((client.stream_count("/empty/test", *interval),
interval))
return result
eq_(info(), [])
# Insert a region with just a few points
with client.stream_insert_numpy_context("/empty/test") as ctx:
ctx.update_start(100)
ctx.insert([[140, 1]])
ctx.insert([[150, 1]])
ctx.insert([[160, 1]])
ctx.update_end(200)
ctx.finalize()
eq_(info(), [(3, [100, 200])])
# Delete chunk, which will leave one data point and two intervals
client.stream_remove("/empty/test", 145, 175)
eq_(info(), [(1, [100, 145]),
(0, [175, 200])])
# Try also creating a completely empty interval from scratch,
# in a few different ways.
client.stream_insert("/empty/test", "", 300, 350)
client.stream_insert("/empty/test", [], 400, 450)
with client.stream_insert_numpy_context("/empty/test", 500, 550):
pass
# If enough timestamps aren't provided, empty streams won't be created.
client.stream_insert("/empty/test", [])
with client.stream_insert_numpy_context("/empty/test"):
pass
client.stream_insert("/empty/test", [], start = 600)
with client.stream_insert_numpy_context("/empty/test", start = 700):
pass
client.stream_insert("/empty/test", [], end = 850)
with client.stream_insert_numpy_context("/empty/test", end = 950):
pass
# Try various things that might cause problems
with client.stream_insert_numpy_context("/empty/test", 1000, 1050):
ctx.finalize() # inserts [1000, 1050]
ctx.finalize() # nothing
ctx.finalize() # nothing
ctx.insert([[1100, 1]])
ctx.finalize() # inserts [1100, 1101]
ctx.update_start(1199)
ctx.insert([[1200, 1]])
ctx.update_end(1250)
ctx.finalize() # inserts [1199, 1250]
ctx.update_start(1299)
ctx.finalize() # nothing
ctx.update_end(1350)
ctx.finalize() # nothing
ctx.update_start(1400)
ctx.insert(np.zeros((0,2)))
ctx.update_end(1450)
ctx.finalize()
ctx.update_start(1500)
ctx.insert(np.zeros((0,2)))
ctx.update_end(1550)
ctx.finalize()
ctx.insert(np.zeros((0,2)))
ctx.insert(np.zeros((0,2)))
ctx.insert(np.zeros((0,2)))
ctx.finalize()
# Check everything
eq_(info(), [(1, [100, 145]),
(0, [175, 200]),
(0, [300, 350]),
(0, [400, 450]),
(0, [500, 550]),
(0, [1000, 1050]),
(1, [1100, 1101]),
(1, [1199, 1250]),
(0, [1400, 1450]),
(0, [1500, 1550]),
])
# Clean up
client.stream_remove("/empty/test")
client.stream_destroy("/empty/test")
client.close()